Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015829806.1_cds_XP_016503930.1_17425
CDS Infomation

[gene=LOC107821957] [db_xref=GeneID:107821957] [protein=putative indole-3-acetic acid-amido synthetase GH3.9 isoform X2] [protein_id=XP_016503930.1] [location=complement(join(6117..6421,6922..7203,7792..8624,9349..9644))] [gbkey=CDS]
Sequence

ATGGACGGAAAGAAATTAGAGTACAAGGGCAAGGAGGCAATGAAAGAAATTGAGAGACTA
ACGAAGAACGCTGATGAAGTTCAAGAGGGAATTCTAAGAGAAATTTTATCTCAAAATGGG
GAAACTGAATACTTGAAAAAATTCATAGGATCAAAAGATAATAAACAAGTCTCAAAATTC
AAGAGTCTTGTGCCAGCAGTTACTTACGAGGATATTCAGCCTTATATCCTACGAATTGCT
AATGGAGAAGACCCTATTCTTATTTCTGCGAACCCAATCACTGAAATGCTTTGCAGGTAC
ATACCAGGACTTGATGAAGGTAAAGCCATGTTCCTCTACTTTGTCAAGGCAGAAATGTCT
ACACCTTGTGGCATACCAGCAAGGACAGTACTAACAAGTTACTACGAAAGCAAGCACTTT
AAATGTCGATCAAAGGATCCTTATAACGATTTCACAAGCCCAGACCAAGCTATACTTTGT
TATGACAGTAACCAAAGCATGTATTGCCAGTTACTAGCAGGACTTGTCTATCGCCACCAA
GTCCTTCGAATCGGGGCCGTTTTCGCCTCCGCCCTCCTCCGTGCCATCTCTTTCCTCCAA
CGTAATTGGCAAAATATGTGTCATGACATTCGAACGGGCCAATTAAACGCCATGATCACC
GATGTTTCTTGTCGATCTGCTCTGTCCAATATTCTTTCGACTTTAAACCTAGATTCTGAT
ATCGTTGCAGATGAGATTGAGGAAATTTGTGGGCGTTCCTCGTGGAAGGGGATAATTTGC
CAACTTTGGCCTAAGGCGAAATATATTGAGGCAGTGGTCACAGGGTCCATGTCACAATAT
ATACCAGCTTTAGAGTACTATAGTGAAGGAAAATTGCCTTTAATTTGTACAATGTATGCC
TCGTCTGAATGTTACTTTGGTGTCAATTTGAAACCCTTGAGTCCTCCAGATGAGGTGTCT
TTCACCCTATTGCCTAATATGGCATATTTTGAATTCATACCTTTAGGAGCTAATGGAACT
TTCTTAATGGACTTGGACGAGGAACAGTTTGTGCCTCAGAGTAAGCTGGTTGACCTGGTC
CACGTTAGACTCGGTTATTATTACGAGTTGGTGGTTACTACATTTTCAGGACTGTATCGG
TATCGCATCGGAGATGTGTTGCAAGTAACTGGATTCCACAATAAAGCCCCTCAATTCAGA
TTCATTTGCCGAAGAAACGTGGTGCTCAGCATTGACAATGACAAGACCAACGAGAAAGAC
TTGCACAGGAGCATCACCCTCGCCAAGAAACTCCTGGAGCCGCACCAAGCTCTGCTCGTC
GAATACACCAGTTACGCCGACGCCTCTTCCGTGCCAGGGCACTACGTCCTCTATTGGGAA
ATCGTTCACAGCCATTCCATCGTGAACAAAGATGTCAATGTGGAAGCACAAGTAGTTGAA
GAGTGTTGCATTGCCATTGAAGAAGAGCTTGACTACATATACAGACGCTGTCGGACGAAC
GACAAGTCCATTGGGCCGTTGGAGATTCGATTGGTGAAGCCAGGCACTTTTGAAGCGCTA
ATGGACTTGCTTATAAGTCAAGGTGGATCCATTAATCAGTACAAAACTCCAAGATGCATT
ATCTCCAATGACTCTGCACTTCAACTTCTAAATTCTAATGTCAAAGATTCTTATTTCAGC
CCAAGGGAACCTTCTTGGAAAGCTTCATCCTCTTAA

Peptide Sequence

PEP ID

XP_016503930.1
PEP Infomation

PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 isoform X2 [Nicotiana tabacum]
Sequence

MDGKKLEYKGKEAMKEIERLTKNADEVQEGILREILSQNGETEYLKKFIGSKDNKQVSKF
KSLVPAVTYEDIQPYILRIANGEDPILISANPITEMLCRYIPGLDEGKAMFLYFVKAEMS
TPCGIPARTVLTSYYESKHFKCRSKDPYNDFTSPDQAILCYDSNQSMYCQLLAGLVYRHQ
VLRIGAVFASALLRAISFLQRNWQNMCHDIRTGQLNAMITDVSCRSALSNILSTLNLDSD
IVADEIEEICGRSSWKGIICQLWPKAKYIEAVVTGSMSQYIPALEYYSEGKLPLICTMYA
SSECYFGVNLKPLSPPDEVSFTLLPNMAYFEFIPLGANGTFLMDLDEEQFVPQSKLVDLV
HVRLGYYYELVVTTFSGLYRYRIGDVLQVTGFHNKAPQFRFICRRNVVLSIDNDKTNEKD
LHRSITLAKKLLEPHQALLVEYTSYADASSVPGHYVLYWEIVHSHSIVNKDVNVEAQVVE
ECCIAIEEELDYIYRRCRTNDKSIGPLEIRLVKPGTFEALMDLLISQGGSINQYKTPRCI
ISNDSALQLLNSNVKDSYFSPREPSWKASSS

Transcript Sequence

Gene sequence data has not been registered.